Welcome to Protein Design!
Want to have a peek at what you will learn in the lab? This page contains a series of problem sets designed to help you get started with protein design using Google Colab. Each problem set includes a Colab notebook and instructions to guide you through the process.
Do not hesitate to contact me if you have any questions, want to report errors, or want to create your own problem sets.
Problem Set 1: Play with Pymol and Biotite
The fundamentals of protein structure and visualization.
- Introduction to PyMOL
- Basic protein visualization
- Understanding secondary structures
Problem Set 2: Protein-Ligand Complex prediction
Explore protein-ligand interactions prediction using AlphaFold-type of models.
- Generate Multiple sequence alignments (MSA) files.
- Run AlphaFold-type models to predict protein-ligand complexes